J4_8SYL_013

3D structure

PDB id

8SYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8SYL|1|a|C|183, 8SYL|1|a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8SYL_013 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1864

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8SYL|1|a|G|142
8SYL|1|a|A|143
8SYL|1|a|G|144
*
8SYL|1|a|C|178
8SYL|1|a|A|179
8SYL|1|a|U|180
8SYL|1|a|A|181
8SYL|1|a|A|182
8SYL|1|a|C|183
8SYL|1|a|G|184
*
8SYL|1|a|C|193
8SYL|1|a|C|194
8SYL|1|a|A|195
8SYL|1|a|A|196
8SYL|1|a|A|197
8SYL|1|a|G|198
*
8SYL|1|a|U|219
8SYL|1|a|G|220
8SYL|1|a|C|221

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20