J4_8SYL_015
3D structure
- PDB id
- 8SYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(7MG)UCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 8SYL|1|w|4SU|8, 8SYL|1|w|U|47, 8SYL|1|w|C|48
- QA status
- Modified nucleotides: 4SU, 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8SYL_015 not in the Motif Atlas
- Homologous match to J4_3WQY_001
- Geometric discrepancy: 0.2606
- The information below is about J4_3WQY_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.27
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 53
Unit IDs
8SYL|1|w|A|7
8SYL|1|w|4SU|8
8SYL|1|w|A|9
8SYL|1|w|G|10
*
8SYL|1|w|C|25
8SYL|1|w|A|26
8SYL|1|w|G|27
*
8SYL|1|w|C|43
8SYL|1|w|G|44
8SYL|1|w|U|45
8SYL|1|w|7MG|46
8SYL|1|w|U|47
8SYL|1|w|C|48
8SYL|1|w|C|49
*
8SYL|1|w|G|65
8SYL|1|w|U|66
Current chains
- Chain w
- phenylalanine tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: