J4_8SYL_017
3D structure
- PDB id
- 8SYL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with amikacin, mRNA, and A-, P-, and E-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- A(4SU)AG*CAG*CGU(7MG)UCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 8SYL|1|y|4SU|8, 8SYL|1|y|U|47, 8SYL|1|y|C|48
- QA status
- Modified nucleotides: 4SU, 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8SYL_017 not in the Motif Atlas
- Homologous match to J4_4WT8_031
- Geometric discrepancy: 0.2667
- The information below is about J4_4WT8_031
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.26
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 56
Unit IDs
8SYL|1|y|A|7
8SYL|1|y|4SU|8
8SYL|1|y|A|9
8SYL|1|y|G|10
*
8SYL|1|y|C|25
8SYL|1|y|A|26
8SYL|1|y|G|27
*
8SYL|1|y|C|43
8SYL|1|y|G|44
8SYL|1|y|U|45
8SYL|1|y|7MG|46
8SYL|1|y|U|47
8SYL|1|y|C|48
8SYL|1|y|C|49
*
8SYL|1|y|G|65
8SYL|1|y|U|66
Current chains
- Chain y
- phenylalanine tRNA
Nearby chains
- Chain 5
- 50S ribosomal protein L33
Coloring options: