J4_8T3A_012

3D structure

PDB id

8T3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, sordarin, and hibernating factor Los2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUGG*CGU*AAGGUCG*CC

Length

16 nucleotides

Bulged bases

8T3A|1|tE|U|8, 8T3A|1|tE|U|48, 8T3A|1|tE|C|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8T3A_012 not in the Motif Atlas

Homologous match to J4_6UFG_001

Geometric discrepancy: 0.1929

The information below is about J4_6UFG_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.29

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

54

Unit IDs

8T3A|1|tE|G|7
8T3A|1|tE|U|8
8T3A|1|tE|G|9
8T3A|1|tE|G|10
*
8T3A|1|tE|C|26
8T3A|1|tE|G|27
8T3A|1|tE|U|28
*
8T3A|1|tE|A|44
8T3A|1|tE|A|45
8T3A|1|tE|G|46
8T3A|1|tE|G|47
8T3A|1|tE|U|48
8T3A|1|tE|C|49
8T3A|1|tE|G|50
*
8T3A|1|tE|C|66
8T3A|1|tE|C|67

Current chains

Chain tE

E site tRNA

Nearby chains

Chain Ao

60S ribosomal protein L42-A

Chain B5

Small subunit ribosomal RNA; SSU rRNA

Chain C5

LSO2 isoform 1