J4_8T3B_002

3D structure

PDB id

8T3B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8T3B_002 not in the Motif Atlas

Homologous match to J4_8C3A_002

Geometric discrepancy: 0.1313

The information below is about J4_8C3A_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3B|1|A1|C|185
8T3B|1|A1|U|186
8T3B|1|A1|A|187
8T3B|1|A1|U|188
8T3B|1|A1|G|189
*
8T3B|1|A1|C|205
8T3B|1|A1|G|206
8T3B|1|A1|U|207
8T3B|1|A1|C|208
*
8T3B|1|A1|G|212
8T3B|1|A1|A|213
8T3B|1|A1|G|214
*
8T3B|1|A1|C|226
8T3B|1|A1|G|227
8T3B|1|A1|U|228
8T3B|1|A1|G|229
8T3B|1|A1|U|230
8T3B|1|A1|G|231

Current chains

Chain A1

25S rRNA

Nearby chains

Chain A4

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

RPL4A isoform 1

Chain AY

60S ribosomal protein L26-A