J4_8T3B_007
3D structure
- PDB id
- 8T3B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAA(PSU)G
- Length
- 21 nucleotides
- Bulged bases
- 8T3B|1|A1|PSU|2314
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8T3B_007 not in the Motif Atlas
- Homologous match to J4_8C3A_007
- Geometric discrepancy: 0.133
- The information below is about J4_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8T3B|1|A1|C|2192
8T3B|1|A1|U|2193
8T3B|1|A1|G|2194
*
8T3B|1|A1|C|2248
8T3B|1|A1|G|2249
*
8T3B|1|A1|C|2267
8T3B|1|A1|U|2268
8T3B|1|A1|U|2269
8T3B|1|A1|A|2270
8T3B|1|A1|A|2271
8T3B|1|A1|G|2272
8T3B|1|A1|G|2273
8T3B|1|A1|U|2274
8T3B|1|A1|A|2275
8T3B|1|A1|G|2276
*
8T3B|1|A1|U|2310
8T3B|1|A1|G|2311
8T3B|1|A1|A|2312
8T3B|1|A1|A|2313
8T3B|1|A1|PSU|2314
8T3B|1|A1|G|2315
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AA
- 60S ribosomal protein L2-A
- Chain An
- 60S ribosomal protein L41-A
- Chain B5
- Small subunit ribosomal RNA; SSU rRNA
- Chain EC
- TSV IRES
Coloring options: