J4_8T3B_012
3D structure
- PDB id
- 8T3B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- UGGAG*CUACACUG*CGUGCUGGGGAUAG*CUUCAACGAG(G7M)AA
- Length
- 40 nucleotides
- Bulged bases
- 8T3B|1|B5|U|1473, 8T3B|1|B5|G|1539
- QA status
- Modified nucleotides: G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8T3B|1|B5|U|1168
8T3B|1|B5|G|1169
8T3B|1|B5|G|1170
8T3B|1|B5|A|1171
8T3B|1|B5|G|1172
*
8T3B|1|B5|C|1467
8T3B|1|B5|U|1468
8T3B|1|B5|A|1469
8T3B|1|B5|C|1470
8T3B|1|B5|A|1471
8T3B|1|B5|C|1472
8T3B|1|B5|U|1473
8T3B|1|B5|G|1474
*
8T3B|1|B5|C|1533
8T3B|1|B5|G|1534
8T3B|1|B5|U|1535
8T3B|1|B5|G|1536
8T3B|1|B5|C|1537
8T3B|1|B5|U|1538
8T3B|1|B5|G|1539
8T3B|1|B5|G|1540
8T3B|1|B5|G|1541
8T3B|1|B5|G|1542
8T3B|1|B5|A|1543
8T3B|1|B5|U|1544
8T3B|1|B5|A|1545
8T3B|1|B5|G|1546
*
8T3B|1|B5|C|1565
8T3B|1|B5|U|1566
8T3B|1|B5|U|1567
8T3B|1|B5|C|1568
8T3B|1|B5|A|1569
8T3B|1|B5|A|1570
8T3B|1|B5|C|1571
8T3B|1|B5|G|1572
8T3B|1|B5|A|1573
8T3B|1|B5|G|1574
8T3B|1|B5|G7M|1575
8T3B|1|B5|A|1576
8T3B|1|B5|A|1577
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BF
- Rps5p
- Chain BP
- RPS15 isoform 1
- Chain BQ
- 40S ribosomal protein S16-A
- Chain BS
- 40S ribosomal protein S18-A
- Chain BT
- 40S ribosomal protein S19-A
- Chain BZ
- RPS25A isoform 1
Coloring options: