J4_8T3D_004
3D structure
- PDB id
- 8T3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure III
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.95 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8T3D|1|A1|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8T3D_004 not in the Motif Atlas
- Homologous match to J4_8P9A_015
- Geometric discrepancy: 0.0744
- The information below is about J4_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8T3D|1|A1|G|1492
8T3D|1|A1|G|1493
8T3D|1|A1|U|1494
8T3D|1|A1|U|1495
8T3D|1|A1|C|1496
*
8T3D|1|A1|G|1520
8T3D|1|A1|G|1521
8T3D|1|A1|U|1522
8T3D|1|A1|U|1523
8T3D|1|A1|A|1524
8T3D|1|A1|G|1525
*
8T3D|1|A1|C|1614
8T3D|1|A1|C|1615
*
8T3D|1|A1|G|1829
8T3D|1|A1|G|1830
8T3D|1|A1|U|1831
8T3D|1|A1|C|1832
8T3D|1|A1|G|1833
8T3D|1|A1|U|1834
8T3D|1|A1|A|1835
8T3D|1|A1|C|1836
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain A4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AR
- 60S ribosomal protein L19-A
- Chain AX
- 60S ribosomal protein L25
- Chain Ag
- 60S ribosomal protein L34-A
- Chain Aj
- 60S ribosomal protein L37-A
- Chain Ak
- RPL38 isoform 1
- Chain Al
- 60S ribosomal protein L39
Coloring options: