J4_8T3E_003

3D structure

PDB id

8T3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CAAAUAU*AG*UGAU*AG

Length

15 nucleotides

Bulged bases

8T3E|1|A1|A|1452, 8T3E|1|A1|U|1455, 8T3E|1|A1|A|1456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8T3E_003 not in the Motif Atlas

Homologous match to J4_8C3A_003

Geometric discrepancy: 0.1621

The information below is about J4_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8T3E|1|A1|C|1451
8T3E|1|A1|A|1452
8T3E|1|A1|A|1453
8T3E|1|A1|A|1454
8T3E|1|A1|U|1455
8T3E|1|A1|A|1456
8T3E|1|A1|U|1457
*
8T3E|1|A1|A|1475
8T3E|1|A1|G|1476
*
8T3E|1|A1|U|1877
8T3E|1|A1|G|1878
8T3E|1|A1|A|1879
8T3E|1|A1|U|1880
*
8T3E|1|A1|A|2352
8T3E|1|A1|G|2353

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AP

60S ribosomal protein L17-A

Chain AR

60S ribosomal protein L19-A

Chain Ad

60S ribosomal protein L31-A