3D structure

PDB id
8T3E (explore in PDB, NAKB, or RNA 3D Hub)
Description
Hypomethylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES), eEF2, GDP, and sordarin, Structure IV
Experimental method
ELECTRON MICROSCOPY
Resolution
3.04 Å

Loop

Sequence
GAC(PSU)G*CAUAG*UGAUU*AUUAAC
Length
21 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8T3E_006 not in the Motif Atlas
Homologous match to J4_8C3A_006
Geometric discrepancy: 0.0703
The information below is about J4_8C3A_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8T3E|1|A1|G|2130
8T3E|1|A1|A|2131
8T3E|1|A1|C|2132
8T3E|1|A1|PSU|2133
8T3E|1|A1|G|2134
*
8T3E|1|A1|C|2146
8T3E|1|A1|A|2147
8T3E|1|A1|U|2148
8T3E|1|A1|A|2149
8T3E|1|A1|G|2150
*
8T3E|1|A1|U|2186
8T3E|1|A1|G|2187
8T3E|1|A1|A|2188
8T3E|1|A1|U|2189
8T3E|1|A1|U|2190
*
8T3E|1|A1|A|2317
8T3E|1|A1|U|2318
8T3E|1|A1|U|2319
8T3E|1|A1|A|2320
8T3E|1|A1|A|2321
8T3E|1|A1|C|2322

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AA
60S ribosomal protein L2-A
Chain An
60S ribosomal protein L41-A
Chain Ap
60S ribosomal protein L43-A
Chain B5
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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