J4_8T5D_001
3D structure
- PDB id
- 8T5D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 8T5D|1|5|U|8, 8T5D|1|5|U|47, 8T5D|1|5|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8T5D_001 not in the Motif Atlas
- Homologous match to J4_4WT8_034
- Geometric discrepancy: 0.1454
- The information below is about J4_4WT8_034
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
8T5D|1|5|G|7
8T5D|1|5|U|8
8T5D|1|5|G|9
8T5D|1|5|G|10
*
8T5D|1|5|C|25
8T5D|1|5|G|26
8T5D|1|5|U|27
*
8T5D|1|5|A|43
8T5D|1|5|A|44
8T5D|1|5|G|45
8T5D|1|5|G|46
8T5D|1|5|U|47
8T5D|1|5|C|48
8T5D|1|5|G|49
*
8T5D|1|5|C|65
8T5D|1|5|C|66
Current chains
- Chain 5
- tRNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain l
- 30S ribosomal protein S13
- Chain v
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: