J4_8T5D_002

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8T5D|1|B|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8T5D_002 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2045

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8T5D|1|B|C|268
8T5D|1|B|C|269
*
8T5D|1|B|G|370
8T5D|1|B|A|371
8T5D|1|B|G|372
8T5D|1|B|U|373
8T5D|1|B|A|374
8T5D|1|B|G|375
*
8T5D|1|B|U|399
8T5D|1|B|G|400
8T5D|1|B|A|401
8T5D|1|B|A|402
8T5D|1|B|U|403
8T5D|1|B|A|404
8T5D|1|B|U|405
8T5D|1|B|G|406
*
8T5D|1|B|C|421
8T5D|1|B|A|422
8T5D|1|B|A|423
8T5D|1|B|G|424

Current chains

Chain B

23S RNA

Nearby chains

Chain X

50S ribosomal protein L28