J4_8T5D_012

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8T5D_012 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.2363

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8T5D|1|B|G|2643
8T5D|1|B|G|2644
8T5D|1|B|G|2645
8T5D|1|B|C|2646
*
8T5D|1|B|G|2674
8T5D|1|B|A|2675
8T5D|1|B|C|2676
*
8T5D|1|B|G|2731
8T5D|1|B|G|2732
8T5D|1|B|A|2733
8T5D|1|B|A|2734
8T5D|1|B|G|2735
*
8T5D|1|B|U|2769
8T5D|1|B|G|2770
8T5D|1|B|C|2771

Current chains

Chain B

23S RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain K

50S ribosomal protein L14