J4_8T5D_013

3D structure

PDB id

8T5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8T5D|1|v|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8T5D_013 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.3359

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8T5D|1|v|G|115
8T5D|1|v|A|116
8T5D|1|v|G|117
8T5D|1|v|U|118
8T5D|1|v|A|119
8T5D|1|v|A|120
8T5D|1|v|U|121
8T5D|1|v|G|122
*
8T5D|1|v|U|239
8T5D|1|v|G|240
*
8T5D|1|v|C|286
8T5D|1|v|U|287
8T5D|1|v|A|288
8T5D|1|v|G|289
*
8T5D|1|v|C|311
8T5D|1|v|C|312

Current chains

Chain v

16s RNA

Nearby chains

Chain o

30S ribosomal protein S16

Chain p

30S ribosomal protein S17