J4_8T5H_006

3D structure

PDB id

8T5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

8T5H|1|B|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8T5H_006 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.0836

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8T5H|1|B|G|1310
8T5H|1|B|G|1311
8T5H|1|B|U|1312
8T5H|1|B|U|1313
8T5H|1|B|C|1314
*
8T5H|1|B|G|1338
8T5H|1|B|G|1339
8T5H|1|B|U|1340
8T5H|1|B|G|1341
8T5H|1|B|A|1342
8T5H|1|B|G|1343
*
8T5H|1|B|C|1404
8T5H|1|B|U|1405
*
8T5H|1|B|A|1597
8T5H|1|B|A|1598
8T5H|1|B|U|1599
8T5H|1|B|C|1600
8T5H|1|B|G|1601
8T5H|1|B|U|1602
8T5H|1|B|A|1603
8T5H|1|B|C|1604

Current chains

Chain B

23S

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23