3D structure

PDB id
8T5H (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
GCG*CGAAAG*CCGUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
8T5H|1|v|C|576, 8T5H|1|v|A|815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8T5H_015 not in the Motif Atlas
Homologous match to J4_5J7L_003
Geometric discrepancy: 0.0762
The information below is about J4_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

8T5H|1|v|G|575
8T5H|1|v|C|576
8T5H|1|v|G|577
*
8T5H|1|v|C|764
8T5H|1|v|G|765
8T5H|1|v|A|766
8T5H|1|v|A|767
8T5H|1|v|A|768
8T5H|1|v|G|769
*
8T5H|1|v|C|810
8T5H|1|v|C|811
8T5H|1|v|G|812
8T5H|1|v|U|813
8T5H|1|v|A|814
8T5H|1|v|A|815
8T5H|1|v|A|816
8T5H|1|v|C|817
8T5H|1|v|G|818
8T5H|1|v|A|819
8T5H|1|v|U|820
8T5H|1|v|G|821
*
8T5H|1|v|C|879
8T5H|1|v|C|880

Current chains

Chain v
16S

Nearby chains

Chain B
Large subunit ribosomal RNA; LSU rRNA
Chain g
30S ribosomal protein S8
Chain k
30S ribosomal protein S12
Chain n
30S ribosomal protein S15
Chain p
30S ribosomal protein S17

Coloring options:


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