J4_8T8B_001

3D structure

PDB id

8T8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MAI-tripeptidyl-tRNA analog ACCA-IAMf at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

8T8B|1|1A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8T8B_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.045

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8T8B|1|1A|C|268
8T8B|1|1A|U|269
*
8T8B|1|1A|G|370
8T8B|1|1A|A|371
8T8B|1|1A|G|372
8T8B|1|1A|U|373
8T8B|1|1A|A|374
8T8B|1|1A|C|375
*
8T8B|1|1A|G|399
8T8B|1|1A|G|400
8T8B|1|1A|A|401
8T8B|1|1A|A|402
8T8B|1|1A|U|403
8T8B|1|1A|C|404
8T8B|1|1A|U|405
8T8B|1|1A|G|406
*
8T8B|1|1A|U|421
8T8B|1|1A|A|422
8T8B|1|1A|A|423
8T8B|1|1A|G|424

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9