J4_8T8B_013

3D structure

PDB id

8T8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MAI-tripeptidyl-tRNA analog ACCA-IAMf at 2.65A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.65 Å

Loop

Sequence

GGG*CGAAAG*CCCUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

8T8B|1|1a|A|815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8T8B_013 not in the Motif Atlas

Homologous match to J4_4LFB_003

Geometric discrepancy: 0.0708

The information below is about J4_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.1

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

8T8B|1|1a|G|575
8T8B|1|1a|G|576
8T8B|1|1a|G|577
*
8T8B|1|1a|C|764
8T8B|1|1a|G|765
8T8B|1|1a|A|766
8T8B|1|1a|A|767
8T8B|1|1a|A|768
8T8B|1|1a|G|769
*
8T8B|1|1a|C|810
8T8B|1|1a|C|811
8T8B|1|1a|C|812
8T8B|1|1a|U|813
8T8B|1|1a|A|814
8T8B|1|1a|A|815
8T8B|1|1a|A|816
8T8B|1|1a|C|817
8T8B|1|1a|G|818
8T8B|1|1a|A|819
8T8B|1|1a|U|820
8T8B|1|1a|G|821
*
8T8B|1|1a|C|879
8T8B|1|1a|C|880

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1A

Large subunit ribosomal RNA; LSU rRNA

Chain 1h

30S ribosomal protein S8

Chain 1k

30S ribosomal protein S11

Chain 1l

30S ribosomal protein S12

Chain 1o

30S ribosomal protein S15

Chain 1q

30S ribosomal protein S17