J4_8T8C_001
3D structure
- PDB id
- 8T8C (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site formyl-MFI-tripeptidyl-tRNA analog ACCA-IFMf at 2.60A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.6 Å
Loop
- Sequence
- CU*GAGUAC*GGAAUCUG*UAAG
- Length
- 20 nucleotides
- Bulged bases
- 8T8C|1|1A|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8T8C_001 not in the Motif Atlas
- Homologous match to J4_9DFE_001
- Geometric discrepancy: 0.0565
- The information below is about J4_9DFE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8T8C|1|1A|C|268
8T8C|1|1A|U|269
*
8T8C|1|1A|G|370
8T8C|1|1A|A|371
8T8C|1|1A|G|372
8T8C|1|1A|U|373
8T8C|1|1A|A|374
8T8C|1|1A|C|375
*
8T8C|1|1A|G|399
8T8C|1|1A|G|400
8T8C|1|1A|A|401
8T8C|1|1A|A|402
8T8C|1|1A|U|403
8T8C|1|1A|C|404
8T8C|1|1A|U|405
8T8C|1|1A|G|406
*
8T8C|1|1A|U|421
8T8C|1|1A|A|422
8T8C|1|1A|A|423
8T8C|1|1A|G|424
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1I
- 50S ribosomal protein L9
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