J4_8UD6_001

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

8UD6|1|1A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UD6_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0528

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8UD6|1|1A|C|268
8UD6|1|1A|U|269
*
8UD6|1|1A|G|370
8UD6|1|1A|A|371
8UD6|1|1A|G|372
8UD6|1|1A|U|373
8UD6|1|1A|A|374
8UD6|1|1A|C|375
*
8UD6|1|1A|G|399
8UD6|1|1A|G|400
8UD6|1|1A|A|401
8UD6|1|1A|A|402
8UD6|1|1A|U|403
8UD6|1|1A|C|404
8UD6|1|1A|U|405
8UD6|1|1A|G|406
*
8UD6|1|1A|U|421
8UD6|1|1A|A|422
8UD6|1|1A|A|423
8UD6|1|1A|G|424

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9