J4_8UD6_020

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GGUUC*GGUUAG*CU*ACCCGUAC

Length

21 nucleotides

Bulged bases

8UD6|1|2A|U|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UD6_020 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.0616

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8UD6|1|2A|G|1310
8UD6|1|2A|G|1311
8UD6|1|2A|U|1312
8UD6|1|2A|U|1313
8UD6|1|2A|C|1314
*
8UD6|1|2A|G|1338
8UD6|1|2A|G|1339
8UD6|1|2A|U|1340
8UD6|1|2A|U|1341
8UD6|1|2A|A|1342
8UD6|1|2A|G|1343
*
8UD6|1|2A|C|1404
8UD6|1|2A|U|1405
*
8UD6|1|2A|A|1597
8UD6|1|2A|C|1598
8UD6|1|2A|C|1599
8UD6|1|2A|C|1600
8UD6|1|2A|G|1601
8UD6|1|2A|U|1602
8UD6|1|2A|A|1603
8UD6|1|2A|C|1604

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2X

50S ribosomal protein L23