J4_8UD6_027

3D structure

PDB id

8UD6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GAGUAACG*UC*GUAG*CC

Length

16 nucleotides

Bulged bases

8UD6|1|2a|C|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UD6_027 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.0509

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8UD6|1|2a|G|115
8UD6|1|2a|A|116
8UD6|1|2a|G|117
8UD6|1|2a|U|118
8UD6|1|2a|A|119
8UD6|1|2a|A|120
8UD6|1|2a|C|121
8UD6|1|2a|G|122
*
8UD6|1|2a|U|239
8UD6|1|2a|C|240
*
8UD6|1|2a|G|286
8UD6|1|2a|U|287
8UD6|1|2a|A|288
8UD6|1|2a|G|289
*
8UD6|1|2a|C|311
8UD6|1|2a|C|312

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2p

30S ribosomal protein S16

Chain 2q

30S ribosomal protein S17