J4_8UD7_001

3D structure

PDB id

8UD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.55 Å

Loop

Sequence

CU*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

8UD7|1|1A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UD7_001 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.0509

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8UD7|1|1A|C|268
8UD7|1|1A|U|269
*
8UD7|1|1A|G|370
8UD7|1|1A|A|371
8UD7|1|1A|G|372
8UD7|1|1A|U|373
8UD7|1|1A|A|374
8UD7|1|1A|C|375
*
8UD7|1|1A|G|399
8UD7|1|1A|G|400
8UD7|1|1A|A|401
8UD7|1|1A|A|402
8UD7|1|1A|U|403
8UD7|1|1A|C|404
8UD7|1|1A|U|405
8UD7|1|1A|G|406
*
8UD7|1|1A|U|421
8UD7|1|1A|A|422
8UD7|1|1A|A|423
8UD7|1|1A|G|424

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9