3D structure

PDB id
8UD7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with cresomycin, mRNA, deacylated A-site tRNAphe, aminoacylated P-site fMet-tRNAmet, and deacylated E-site tRNAphe at 2.70A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
GGG*CGAAAG*CCCUAAACGAUG*CC
Length
23 nucleotides
Bulged bases
8UD7|1|1a|A|815
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8UD7_013 not in the Motif Atlas
Homologous match to J4_4LFB_003
Geometric discrepancy: 0.0438
The information below is about J4_4LFB_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61885.6
Basepair signature
cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
Number of instances in this motif group
4

Unit IDs

8UD7|1|1a|G|575
8UD7|1|1a|G|576
8UD7|1|1a|G|577
*
8UD7|1|1a|C|764
8UD7|1|1a|G|765
8UD7|1|1a|A|766
8UD7|1|1a|A|767
8UD7|1|1a|A|768
8UD7|1|1a|G|769
*
8UD7|1|1a|C|810
8UD7|1|1a|C|811
8UD7|1|1a|C|812
8UD7|1|1a|U|813
8UD7|1|1a|A|814
8UD7|1|1a|A|815
8UD7|1|1a|A|816
8UD7|1|1a|C|817
8UD7|1|1a|G|818
8UD7|1|1a|A|819
8UD7|1|1a|U|820
8UD7|1|1a|G|821
*
8UD7|1|1a|C|879
8UD7|1|1a|C|880

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1A
Large subunit ribosomal RNA; LSU rRNA
Chain 1h
30S ribosomal protein S8
Chain 1l
30S ribosomal protein S12
Chain 1o
30S ribosomal protein S15
Chain 1q
30S ribosomal protein S17

Coloring options:


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