J4_8UIK_008

3D structure

PDB id

8UIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human 80S ribosome with EBP1 (consensus map)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8UIK|1|L5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UIK_008 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.1735

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8UIK|1|L5|C|3696
8UIK|1|L5|U|3697
8UIK|1|L5|G|3698
*
8UIK|1|L5|C|3752
8UIK|1|L5|G|3753
*
8UIK|1|L5|C|3771
8UIK|1|L5|U|3772
8UIK|1|L5|U|3773
8UIK|1|L5|A|3774
8UIK|1|L5|A|3775
8UIK|1|L5|G|3776
8UIK|1|L5|G|3777
8UIK|1|L5|U|3778
8UIK|1|L5|A|3779
8UIK|1|L5|G|3780
*
8UIK|1|L5|U|3814
8UIK|1|L5|G|3815
8UIK|1|L5|A|3816
8UIK|1|L5|A|3817
8UIK|1|L5|U|3818
8UIK|1|L5|G|3819

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA