J4_8UJD_007

3D structure

PDB id

8UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human 60S ribosome with eIF6

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GACUG*CAAAG*UGAUU*AUGAAC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UJD_007 not in the Motif Atlas

Homologous match to J4_8P9A_017

Geometric discrepancy: 0.087

The information below is about J4_8P9A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_78485.1

Basepair signature

cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW

Number of instances in this motif group

6

Unit IDs

8UJD|1|L5|G|3634
8UJD|1|L5|A|3635
8UJD|1|L5|C|3636
8UJD|1|L5|U|3637
8UJD|1|L5|G|3638
*
8UJD|1|L5|C|3650
8UJD|1|L5|A|3651
8UJD|1|L5|A|3652
8UJD|1|L5|A|3653
8UJD|1|L5|G|3654
*
8UJD|1|L5|U|3690
8UJD|1|L5|G|3691
8UJD|1|L5|A|3692
8UJD|1|L5|U|3693
8UJD|1|L5|U|3694
*
8UJD|1|L5|A|3821
8UJD|1|L5|U|3822
8UJD|1|L5|G|3823
8UJD|1|L5|A|3824
8UJD|1|L5|A|3825
8UJD|1|L5|C|3826

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Lp

60S ribosomal protein L37a