J4_8UJD_010
3D structure
- PDB id
- 8UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human 60S ribosome with eIF6
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- CUAAG*UUGAU*ACC*GGG
- Length
- 16 nucleotides
- Bulged bases
- 8UJD|1|L5|A|4234
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8UJD_010 not in the Motif Atlas
- Homologous match to J4_8CRE_008
- Geometric discrepancy: 0.1781
- The information below is about J4_8CRE_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_04930.6
- Basepair signature
- cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8UJD|1|L5|C|4231
8UJD|1|L5|U|4232
8UJD|1|L5|A|4233
8UJD|1|L5|A|4234
8UJD|1|L5|G|4235
*
8UJD|1|L5|U|4289
8UJD|1|L5|U|4290
8UJD|1|L5|G|4291
8UJD|1|L5|A|4292
8UJD|1|L5|U|4293
*
8UJD|1|L5|A|4317
8UJD|1|L5|C|4318
8UJD|1|L5|C|4319
*
8UJD|1|L5|G|4328
8UJD|1|L5|G|4329
8UJD|1|L5|G|4330
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL18
- Chain LT
- 60S ribosomal protein L21
- Chain Lb
- Large ribosomal subunit protein eL29
- Chain Lo
- 60S ribosomal protein L36a
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