J4_8UJK_001

3D structure

PDB id

8UJK (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated A-P-Z state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.54 Å

Loop

Sequence

GUAG*CGU*AAGGUCC*GC

Length

16 nucleotides

Bulged bases

8UJK|1|At|U|8, 8UJK|1|At|U|47, 8UJK|1|At|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UJK_001 not in the Motif Atlas

Homologous match to J4_1IL2_001

Geometric discrepancy: 0.2318

The information below is about J4_1IL2_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_58311.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

30

Unit IDs

8UJK|1|At|G|7
8UJK|1|At|U|8
8UJK|1|At|A|9
8UJK|1|At|G|10
*
8UJK|1|At|C|25
8UJK|1|At|G|26
8UJK|1|At|U|27
*
8UJK|1|At|A|43
8UJK|1|At|A|44
8UJK|1|At|G|45
8UJK|1|At|G|46
8UJK|1|At|U|47
8UJK|1|At|C|48
8UJK|1|At|C|49
*
8UJK|1|At|G|65
8UJK|1|At|C|66

Current chains

Chain At

A site tRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain Se

Small ribosomal subunit protein eS30