J4_8UJK_002
3D structure
- PDB id
- 8UJK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ HHT and CHX treated A-P-Z state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.54 Å
Loop
- Sequence
- CC*GAGUCG*CAAAGCG*UAAG
- Length
- 19 nucleotides
- Bulged bases
- 8UJK|1|L5|C|309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8UJK_002 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.128
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8UJK|1|L5|C|111
8UJK|1|L5|C|112
*
8UJK|1|L5|G|278
8UJK|1|L5|A|279
8UJK|1|L5|G|280
8UJK|1|L5|U|281
8UJK|1|L5|C|282
8UJK|1|L5|G|283
*
8UJK|1|L5|C|304
8UJK|1|L5|A|305
8UJK|1|L5|A|306
8UJK|1|L5|A|307
8UJK|1|L5|G|308
8UJK|1|L5|C|309
8UJK|1|L5|G|310
*
8UJK|1|L5|U|327
8UJK|1|L5|A|328
8UJK|1|L5|A|329
8UJK|1|L5|G|330
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LL
- Large ribosomal subunit protein eL13
- Chain LN
- 60S ribosomal protein L15
- Chain Lh
- 60S ribosomal protein L35
- Chain Li
- 60S ribosomal protein L36
Coloring options: