J4_8UKB_008

3D structure

PDB id

8UKB (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ HHT and CHX treated human hibernating state without E-tRNA 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

8UKB|1|L5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UKB_008 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.2339

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

8UKB|1|L5|C|3696
8UKB|1|L5|U|3697
8UKB|1|L5|G|3698
*
8UKB|1|L5|C|3752
8UKB|1|L5|G|3753
*
8UKB|1|L5|C|3771
8UKB|1|L5|U|3772
8UKB|1|L5|U|3773
8UKB|1|L5|A|3774
8UKB|1|L5|A|3775
8UKB|1|L5|G|3776
8UKB|1|L5|G|3777
8UKB|1|L5|U|3778
8UKB|1|L5|A|3779
8UKB|1|L5|G|3780
*
8UKB|1|L5|U|3814
8UKB|1|L5|G|3815
8UKB|1|L5|A|3816
8UKB|1|L5|A|3817
8UKB|1|L5|U|3818
8UKB|1|L5|G|3819

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA