J4_8UO6_001

3D structure

PDB id

8UO6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

HIV-1 Rev Response Element (RRE) Stem-Loop II (SLII)

Experimental method

X-RAY DIFFRACTION

Resolution

2.85 Å

Loop

Sequence

AUAG*CAG*CGGGUCC*GU

Length

16 nucleotides

Bulged bases

8UO6|1|A|U|8, 8UO6|1|A|U|105, 8UO6|1|A|C|106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.27

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

53

Unit IDs

8UO6|1|A|A|7
8UO6|1|A|U|8
8UO6|1|A|A|9
8UO6|1|A|G|10
*
8UO6|1|A|C|25
8UO6|1|A|A|26
8UO6|1|A|G|27
*
8UO6|1|A|C|101
8UO6|1|A|G|102
8UO6|1|A|G|103
8UO6|1|A|G|104
8UO6|1|A|U|105
8UO6|1|A|C|106
8UO6|1|A|C|107
*
8UO6|1|A|G|123
8UO6|1|A|U|124

Current chains

Chain A

HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold

Nearby chains

Chain B

HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold