J4_8UPO_005
3D structure
- PDB id
- 8UPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 8UPO|1|D|C|576, 8UPO|1|D|A|815, 8UPO|1|D|C|817, 8UPO|1|D|A|819
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8UPO_005 not in the Motif Atlas
- Homologous match to J4_5J7L_003
- Geometric discrepancy: 0.0609
- The information below is about J4_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8UPO|1|D|G|575
8UPO|1|D|C|576
8UPO|1|D|G|577
*
8UPO|1|D|C|764
8UPO|1|D|G|765
8UPO|1|D|A|766
8UPO|1|D|A|767
8UPO|1|D|A|768
8UPO|1|D|G|769
*
8UPO|1|D|C|810
8UPO|1|D|C|811
8UPO|1|D|G|812
8UPO|1|D|U|813
8UPO|1|D|A|814
8UPO|1|D|A|815
8UPO|1|D|A|816
8UPO|1|D|C|817
8UPO|1|D|G|818
8UPO|1|D|A|819
8UPO|1|D|U|820
8UPO|1|D|G|821
*
8UPO|1|D|C|879
8UPO|1|D|C|880
Current chains
- Chain D
- 16S rRNA
Nearby chains
- Chain F
- 30S ribosomal protein S21
- Chain N
- 30S ribosomal protein S8
- Chain R
- 30S ribosomal protein S12
- Chain T
- 30S ribosomal protein S15
- Chain V
- 30S ribosomal protein S17
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