J4_8UPO_007

3D structure

PDB id

8UPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class A (TTC-A) containing RfaH bound to ops signal, mRNA with a 21 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UPO_007 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0566

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8UPO|1|a|G|297
8UPO|1|a|G|298
8UPO|1|a|A|299
8UPO|1|a|A|300
8UPO|1|a|G|301
*
8UPO|1|a|C|316
8UPO|1|a|G|317
8UPO|1|a|C|318
8UPO|1|a|G|319
*
8UPO|1|a|C|323
8UPO|1|a|A|324
8UPO|1|a|G|325
*
8UPO|1|a|C|337
8UPO|1|a|G|338
8UPO|1|a|U|339
8UPO|1|a|A|340
8UPO|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

50S ribosomal protein L4