J4_8UQL_003

3D structure

PDB id

8UQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

8UQL|1|D|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UQL_003 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.117

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8UQL|1|D|G|115
8UQL|1|D|A|116
8UQL|1|D|G|117
8UQL|1|D|U|118
8UQL|1|D|A|119
8UQL|1|D|A|120
8UQL|1|D|U|121
8UQL|1|D|G|122
*
8UQL|1|D|U|239
8UQL|1|D|G|240
*
8UQL|1|D|C|286
8UQL|1|D|U|287
8UQL|1|D|A|288
8UQL|1|D|G|289
*
8UQL|1|D|C|311
8UQL|1|D|C|312

Current chains

Chain D

16S rRNA

Nearby chains

Chain U

30S ribosomal protein S16

Chain V

30S ribosomal protein S17