J4_8UQL_004

3D structure

PDB id

8UQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

8UQL|1|D|C|183, 8UQL|1|D|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UQL_004 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0931

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8UQL|1|D|G|142
8UQL|1|D|A|143
8UQL|1|D|G|144
*
8UQL|1|D|C|178
8UQL|1|D|A|179
8UQL|1|D|U|180
8UQL|1|D|A|181
8UQL|1|D|A|182
8UQL|1|D|C|183
8UQL|1|D|G|184
*
8UQL|1|D|C|193
8UQL|1|D|C|194
8UQL|1|D|A|195
8UQL|1|D|A|196
8UQL|1|D|A|197
8UQL|1|D|G|198
*
8UQL|1|D|U|219
8UQL|1|D|G|220
8UQL|1|D|C|221

Current chains

Chain D

16S rRNA

Nearby chains

Chain E

30S ribosomal protein S20