J4_8UQL_006

3D structure

PDB id

8UQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH in loaded state, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

8UQL|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UQL_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1036

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8UQL|1|a|C|268
8UQL|1|a|C|269
*
8UQL|1|a|G|370
8UQL|1|a|A|371
8UQL|1|a|G|372
8UQL|1|a|U|373
8UQL|1|a|A|374
8UQL|1|a|G|375
*
8UQL|1|a|U|399
8UQL|1|a|G|400
8UQL|1|a|A|401
8UQL|1|a|A|402
8UQL|1|a|U|403
8UQL|1|a|A|404
8UQL|1|a|U|405
8UQL|1|a|G|406
*
8UQL|1|a|C|421
8UQL|1|a|A|422
8UQL|1|a|A|423
8UQL|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L28

Chain r

50S ribosomal protein L9