J4_8UR0_010
3D structure
- PDB id
- 8UR0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 24 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGUUC*GGUGAG*CU*AAUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 8UR0|1|a|G|1341
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_8UR0_010 not in the Motif Atlas
- Homologous match to J4_5J7L_022
- Geometric discrepancy: 0.0776
- The information below is about J4_5J7L_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_69051.6
- Basepair signature
- cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8UR0|1|a|G|1310
8UR0|1|a|G|1311
8UR0|1|a|U|1312
8UR0|1|a|U|1313
8UR0|1|a|C|1314
*
8UR0|1|a|G|1338
8UR0|1|a|G|1339
8UR0|1|a|U|1340
8UR0|1|a|G|1341
8UR0|1|a|A|1342
8UR0|1|a|G|1343
*
8UR0|1|a|C|1404
8UR0|1|a|U|1405
*
8UR0|1|a|A|1597
8UR0|1|a|A|1598
8UR0|1|a|U|1599
8UR0|1|a|C|1600
8UR0|1|a|G|1601
8UR0|1|a|U|1602
8UR0|1|a|A|1603
8UR0|1|a|C|1604
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L23
- Chain m
- 50S ribosomal protein L34
Coloring options: