J4_8URI_007

3D structure

PDB id

8URI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) containing RfaH bound to ops signal, NusA, mRNA with a 27 nt long spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.3 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8URI_007 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0566

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

8URI|1|a|G|297
8URI|1|a|G|298
8URI|1|a|A|299
8URI|1|a|A|300
8URI|1|a|G|301
*
8URI|1|a|C|316
8URI|1|a|G|317
8URI|1|a|C|318
8URI|1|a|G|319
*
8URI|1|a|C|323
8URI|1|a|A|324
8URI|1|a|G|325
*
8URI|1|a|C|337
8URI|1|a|G|338
8URI|1|a|U|339
8URI|1|a|A|340
8URI|1|a|C|341

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L24

Chain l

50S ribosomal protein L4