3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
CAUUAAAUC*GCC*GUAAC*GG
Length
19 nucleotides
Bulged bases
8UT0|1|2|A|359
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8UT0_001 not in the Motif Atlas
Homologous match to J4_8C3A_021
Geometric discrepancy: 0.0887
The information below is about J4_8C3A_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_78231.1
Basepair signature
cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-F-F-F-cWW
Number of instances in this motif group
2

Unit IDs

8UT0|1|2|C|99
8UT0|1|2|A|100
8UT0|1|2|U|101
8UT0|1|2|U|102
8UT0|1|2|A|103
8UT0|1|2|A|104
8UT0|1|2|A|105
8UT0|1|2|U|106
8UT0|1|2|C|107
*
8UT0|1|2|G|307
8UT0|1|2|C|308
8UT0|1|2|C|309
*
8UT0|1|2|G|357
8UT0|1|2|U|358
8UT0|1|2|A|359
8UT0|1|2|A|360
8UT0|1|2|C|361
*
8UT0|1|2|G|383
8UT0|1|2|G|384

Current chains

Chain 2
18S rRNA

Nearby chains

Chain SS
40S ribosomal protein S4-A
Chain SV
40S ribosomal protein S8-A
Chain SX
40S ribosomal protein S11-A
Chain Sc
40S ribosomal protein S23-A

Coloring options:


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