3D structure

PDB id
8UT0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Eukaryotic 80S ribosome with Reh1, eIF5A and A/P site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.22 Å

Loop

Sequence
CUG*CG*CUUAAGGUAG*UGAAUG
Length
21 nucleotides
Bulged bases
8UT0|1|A|U|2314
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8UT0_009 not in the Motif Atlas
Homologous match to J4_8C3A_007
Geometric discrepancy: 0.1172
The information below is about J4_8C3A_007
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8UT0|1|A|C|2192
8UT0|1|A|U|2193
8UT0|1|A|G|2194
*
8UT0|1|A|C|2248
8UT0|1|A|G|2249
*
8UT0|1|A|C|2267
8UT0|1|A|U|2268
8UT0|1|A|U|2269
8UT0|1|A|A|2270
8UT0|1|A|A|2271
8UT0|1|A|G|2272
8UT0|1|A|G|2273
8UT0|1|A|U|2274
8UT0|1|A|A|2275
8UT0|1|A|G|2276
*
8UT0|1|A|U|2310
8UT0|1|A|G|2311
8UT0|1|A|A|2312
8UT0|1|A|A|2313
8UT0|1|A|U|2314
8UT0|1|A|G|2315

Current chains

Chain A
25S rRNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain LD
60S ribosomal protein L2-A
Chain Lp
60S ribosomal protein L41-A
Chain Ls
Translation factor eIF5A
Chain n
Transfer RNA; tRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2542 s