J4_8UTI_011

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

AAG*CGAAAG*CCAUAAACUAUG*UU

Length

23 nucleotides

Bulged bases

8UTI|1|E|A|623, 8UTI|1|E|A|1026, 8UTI|1|E|C|1028, 8UTI|1|E|U|1029, 8UTI|1|E|A|1030, 8UTI|1|E|U|1031

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UTI_011 not in the Motif Atlas

Homologous match to J4_8C3A_022

Geometric discrepancy: 0.0881

The information below is about J4_8C3A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.4

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8UTI|1|E|A|622
8UTI|1|E|A|623
8UTI|1|E|G|624
*
8UTI|1|E|C|975
8UTI|1|E|G|976
8UTI|1|E|A|977
8UTI|1|E|A|978
8UTI|1|E|A|979
8UTI|1|E|G|980
*
8UTI|1|E|C|1021
8UTI|1|E|C|1022
8UTI|1|E|A|1023
8UTI|1|E|U|1024
8UTI|1|E|A|1025
8UTI|1|E|A|1026
8UTI|1|E|A|1027
8UTI|1|E|C|1028
8UTI|1|E|U|1029
8UTI|1|E|A|1030
8UTI|1|E|U|1031
8UTI|1|E|G|1032
*
8UTI|1|E|U|1103
8UTI|1|E|U|1104

Current chains

Chain E

18S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain Lp

60S ribosomal protein L41-A

Chain SX

40S ribosomal protein S11-A

Chain SY

40S ribosomal protein S13

Chain SZ

40S ribosomal protein S14-B

Chain Sb

40S ribosomal protein S22-A

Chain Sc

40S ribosomal protein S23-A

Chain Se

40S ribosomal protein S26-B