J4_8UTI_015

3D structure

PDB id

8UTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with Reh1 and A/P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.13 Å

Loop

Sequence

UUAG*CA*UGGUCG*CA

Length

14 nucleotides

Bulged bases

8UTI|1|m|U|8, 8UTI|1|m|U|47, 8UTI|1|m|C|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UTI_015 not in the Motif Atlas

Homologous match to J4_4QEI_001

Geometric discrepancy: 0.2637

The information below is about J4_4QEI_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_72305.5

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW

Number of instances in this motif group

6

Unit IDs

8UTI|1|m|U|7
8UTI|1|m|U|8
8UTI|1|m|A|9
8UTI|1|m|G|10
*
8UTI|1|m|C|25
8UTI|1|m|A|26
*
8UTI|1|m|U|44
8UTI|1|m|G|45
8UTI|1|m|G|46
8UTI|1|m|U|47
8UTI|1|m|C|48
8UTI|1|m|G|49
*
8UTI|1|m|C|65
8UTI|1|m|A|66

Current chains

Chain m

A site tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA