J4_8UU4_001

3D structure

PDB id

8UU4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGUAC*GGAAUCCG*CAAG

Length

20 nucleotides

Bulged bases

8UU4|1|A|C|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UU4_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1255

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

8UU4|1|A|C|270
8UU4|1|A|C|271
*
8UU4|1|A|G|416
8UU4|1|A|A|417
8UU4|1|A|G|418
8UU4|1|A|U|419
8UU4|1|A|A|420
8UU4|1|A|C|421
*
8UU4|1|A|G|445
8UU4|1|A|G|446
8UU4|1|A|A|447
8UU4|1|A|A|448
8UU4|1|A|U|449
8UU4|1|A|C|450
8UU4|1|A|C|451
8UU4|1|A|G|452
*
8UU4|1|A|C|467
8UU4|1|A|A|468
8UU4|1|A|A|469
8UU4|1|A|G|470

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Z

Large ribosomal subunit protein bL28