J4_8UU5_014

3D structure

PDB id

8UU5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

A(4SU)AG*CAG*CGU(G7M)UCC*GU

Length

16 nucleotides

Bulged bases

8UU5|1|x|4SU|8, 8UU5|1|x|U|47, 8UU5|1|x|C|48

QA status

Modified nucleotides: 4SU, G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UU5_014 not in the Motif Atlas

Homologous match to J4_4TUE_004

Geometric discrepancy: 0.2571

The information below is about J4_4TUE_004

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8UU5|1|x|A|7
8UU5|1|x|4SU|8
8UU5|1|x|A|9
8UU5|1|x|G|10
*
8UU5|1|x|C|25
8UU5|1|x|A|26
8UU5|1|x|G|27
*
8UU5|1|x|C|43
8UU5|1|x|G|44
8UU5|1|x|U|45
8UU5|1|x|G7M|46
8UU5|1|x|U|47
8UU5|1|x|C|48
8UU5|1|x|C|49
*
8UU5|1|x|G|65
8UU5|1|x|U|66

Current chains

Chain x

pe/E Hybrid State Phenylalanine tRNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA