J4_8UU6_006

3D structure

PDB id

8UU6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome in complex with p/E-tRNA (structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UC*GGUUAG*CC*GCCCGUA

Length

17 nucleotides

Bulged bases

8UU6|1|A|U|1385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UU6_006 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.1048

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8UU6|1|A|U|1357
8UU6|1|A|C|1358
*
8UU6|1|A|G|1382
8UU6|1|A|G|1383
8UU6|1|A|U|1384
8UU6|1|A|U|1385
8UU6|1|A|A|1386
8UU6|1|A|G|1387
*
8UU6|1|A|C|1448
8UU6|1|A|C|1449
*
8UU6|1|A|G|1646
8UU6|1|A|C|1647
8UU6|1|A|C|1648
8UU6|1|A|C|1649
8UU6|1|A|G|1650
8UU6|1|A|U|1651
8UU6|1|A|A|1652

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain V

Large ribosomal subunit protein uL23