J4_8UU7_001

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGUAC*GGAAUCCG*CAAG

Length

20 nucleotides

Bulged bases

8UU7|1|A|C|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UU7_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.13

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

8UU7|1|A|C|270
8UU7|1|A|C|271
*
8UU7|1|A|G|416
8UU7|1|A|A|417
8UU7|1|A|G|418
8UU7|1|A|U|419
8UU7|1|A|A|420
8UU7|1|A|C|421
*
8UU7|1|A|G|445
8UU7|1|A|G|446
8UU7|1|A|A|447
8UU7|1|A|A|448
8UU7|1|A|U|449
8UU7|1|A|C|450
8UU7|1|A|C|451
8UU7|1|A|G|452
*
8UU7|1|A|C|467
8UU7|1|A|A|468
8UU7|1|A|A|469
8UU7|1|A|G|470

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Z

Large ribosomal subunit protein bL28