J4_8UU7_014

3D structure

PDB id

8UU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

A(4SU)AG*CAG*CGU(7MG)UCC*GU

Length

16 nucleotides

Bulged bases

8UU7|1|y|4SU|8, 8UU7|1|y|U|47, 8UU7|1|y|C|48

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UU7_014 not in the Motif Atlas

Homologous match to J4_4WT8_031

Geometric discrepancy: 0.2529

The information below is about J4_4WT8_031

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_70449.26

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

56

Unit IDs

8UU7|1|y|A|7
8UU7|1|y|4SU|8
8UU7|1|y|A|9
8UU7|1|y|G|10
*
8UU7|1|y|C|25
8UU7|1|y|A|26
8UU7|1|y|G|27
*
8UU7|1|y|C|43
8UU7|1|y|G|44
8UU7|1|y|U|45
8UU7|1|y|7MG|46
8UU7|1|y|U|47
8UU7|1|y|C|48
8UU7|1|y|C|49
*
8UU7|1|y|G|65
8UU7|1|y|U|66

Current chains

Chain y

E-site Phenylalanine tRNA

Nearby chains