3D structure

PDB id
8UU8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CUG*CG*CCUAAGGUAG*CGAAAG
Length
21 nucleotides
Bulged bases
8UU8|1|A|A|2004
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_8UU8_009 not in the Motif Atlas
Homologous match to J4_9DFE_008
Geometric discrepancy: 0.1386
The information below is about J4_9DFE_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_42306.1
Basepair signature
cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
Number of instances in this motif group
5

Unit IDs

8UU8|1|A|C|1866
8UU8|1|A|U|1867
8UU8|1|A|G|1868
*
8UU8|1|A|C|1938
8UU8|1|A|G|1939
*
8UU8|1|A|C|1957
8UU8|1|A|C|1958
8UU8|1|A|U|1959
8UU8|1|A|A|1960
8UU8|1|A|A|1961
8UU8|1|A|G|1962
8UU8|1|A|G|1963
8UU8|1|A|U|1964
8UU8|1|A|A|1965
8UU8|1|A|G|1966
*
8UU8|1|A|C|2000
8UU8|1|A|G|2001
8UU8|1|A|A|2002
8UU8|1|A|A|2003
8UU8|1|A|A|2004
8UU8|1|A|G|2005

Current chains

Chain A
23S Ribosomal RNA

Nearby chains

Chain C
Large ribosomal subunit protein uL2
Chain a
Small subunit ribosomal RNA; SSU rRNA
Chain v
GTPase HflX

Coloring options:


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