J4_8UU8_013

3D structure

PDB id

8UU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-C)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UU*AAUGAUA*UUGAAAG*CG

Length

18 nucleotides

Bulged bases

8UU8|1|a|U|182, 8UU8|1|a|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8UU8|1|a|U|142
8UU8|1|a|U|143
*
8UU8|1|a|A|177
8UU8|1|a|A|178
8UU8|1|a|U|179
8UU8|1|a|G|180
8UU8|1|a|A|181
8UU8|1|a|U|182
8UU8|1|a|A|183
*
8UU8|1|a|U|206
8UU8|1|a|U|207
8UU8|1|a|G|208
8UU8|1|a|A|209
8UU8|1|a|A|210
8UU8|1|a|A|211
8UU8|1|a|G|212
*
8UU8|1|a|C|227
8UU8|1|a|G|228

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain p

Small ribosomal subunit protein bS16

Chain t

Small ribosomal subunit protein bS20