J4_8UU9_001

3D structure

PDB id

8UU9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ratcheted Listeria innocua 70S ribosome (head-swiveled) in complex with HflXr and pe/E-tRNA (structure II-D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAC*GGAAUCCG*CAAG

Length

20 nucleotides

Bulged bases

8UU9|1|A|C|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_8UU9_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1229

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

8UU9|1|A|C|270
8UU9|1|A|C|271
*
8UU9|1|A|G|416
8UU9|1|A|A|417
8UU9|1|A|G|418
8UU9|1|A|U|419
8UU9|1|A|A|420
8UU9|1|A|C|421
*
8UU9|1|A|G|445
8UU9|1|A|G|446
8UU9|1|A|A|447
8UU9|1|A|A|448
8UU9|1|A|U|449
8UU9|1|A|C|450
8UU9|1|A|C|451
8UU9|1|A|G|452
*
8UU9|1|A|C|467
8UU9|1|A|A|468
8UU9|1|A|A|469
8UU9|1|A|G|470

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Z

Large ribosomal subunit protein bL28